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BioCyc

Metabolomics

BioCyc is a comprehensive collection of databases that provides electronic reference sources on metabolic pathways and genome information for thousands of organisms, serving as a valuable resource for biological and metabolic research.

Metabolic pathway databaseGenome visualization toolsBiological database analysisComparative genomics platformCellular metabolism database

MetaCyc

Metabolomics

MetaCyc is a comprehensive database of experimentally elucidated metabolic pathways and enzymes from all domains of life, providing detailed information about metabolic pathways, reactions, compounds, and genes.

metabolicbiochemicalenzyme

MetaboLights

Metabolomics

MetaboLights is a comprehensive database and repository for metabolomics experiments and derived information, providing cross-species metabolic data and tools for metabolomics research.

metabolomicsmetabolicmetabolite

PFAM

Proteomics

Pfam is a comprehensive database of protein families and domains that classifies proteins based on sequence alignments and hidden Markov models, providing essential tools for protein annotation and evolutionary analysis.

proteinprotein annotation tool

PeptideAtlas

Proteomics

PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in mass spectrometry proteomics experiments, providing a comprehensive resource for proteome research and targeted proteomics.

proteomicspeptide mass spectrometrySRM assay database

MaxQuant

Proteomics

MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric datasets with high precision and accuracy, offering comprehensive tools for protein identification and quantification.

proteomicsspectrometryMS data processing

IntAct

Proteomics

IntAct is a comprehensive database of molecular interactions, providing curated molecular interaction data and tools for interaction network analysis, maintained by the European Bioinformatics Institute (EBI).

molecularproteinmolecular network analysis

SWISS-MODEL

Proteomics

SWISS-MODEL is a fully automated protein structure homology modeling server that enables users to generate reliable 3D protein structure models using experimental structures as templates.

proteinhomology3D protein modeling

STRING

Proteomics

STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) is a comprehensive database of known and predicted protein-protein interactions, integrating both physical and functional associations from multiple sources.

proteinmolecular

PRIDE Archive

Proteomics

PRIDE (PRoteomics IDEntifications Database) is EBI's primary public repository for mass spectrometry-based proteomics data, providing researchers with tools to share, browse, and analyze proteomics datasets.

proteomicsspectrometry

ProteomicsDB

Proteomics

RNAcentral is a comprehensive and integrated database that serves as the primary reference resource for all types of non-coding RNA sequences, providing unified access to data from dozens of expert databases.

proteinproteomicsspectrometry

RNAcentral

Transcriptomics

RNAcentral is a comprehensive and integrated database that serves as the primary reference resource for all types of non-coding RNA sequences, providing unified access to data from dozens of expert databases.

non-coding RNA databaseRNA sequence repositoryintegrated RNA resourceRNA reference databasencRNA sequence database
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