Pfam is a comprehensive database of protein families and domains that classifies proteins based on sequence alignments and hidden Markov models, providing essential tools for protein annotation and evolutionary analysis.
PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in mass spectrometry proteomics experiments, providing a comprehensive resource for proteome research and targeted proteomics.
MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric datasets with high precision and accuracy, offering comprehensive tools for protein identification and quantification.
IntAct is a comprehensive database of molecular interactions, providing curated molecular interaction data and tools for interaction network analysis, maintained by the European Bioinformatics Institute (EBI).
SWISS-MODEL is a fully automated protein structure homology modeling server that enables users to generate reliable 3D protein structure models using experimental structures as templates.
STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) is a comprehensive database of known and predicted protein-protein interactions, integrating both physical and functional associations from multiple sources.
PRIDE (PRoteomics IDEntifications Database) is EBI's primary public repository for mass spectrometry-based proteomics data, providing researchers with tools to share, browse, and analyze proteomics datasets.
RNAcentral is a comprehensive and integrated database that serves as the primary reference resource for all types of non-coding RNA sequences, providing unified access to data from dozens of expert databases.
The Protein Data Bank (PDB) is a global repository for 3D structural data of biological macromolecules.
