PRIDE Archive: Advancing Proteomics Through Open Data Sharing
The PRIDE Archive represents a cornerstone in the proteomics research ecosystem, serving as a centralized repository for mass spectrometry-based proteomics data. This EBI-maintained resource ensures data accessibility, reproducibility, and reusability in proteomics research.
Core Functionalities
- Data Submission Submission Features:
- ProteomeXchange integration
- Metadata validation
- File format checking
- Version control
- Dataset identifiers
- Data Types Supported
- Raw MS data
- Peak lists
- Search results
- Protein identifications
- Quantification data
- Post-translational modifications
Key Features
- Data Access Browse and Search:
- Project metadata
- Experimental details
- Protein identifications
- Dataset downloads
- API access
- Quality Control Data Validation:
- Format compliance
- Metadata completeness
- Technical validation
- Search result validation
- Data consistency
Research Applications
- Data Sharing
- Publication support
- Collaboration
- Method validation
- Result verification
- Meta-analysis
- Data Analysis
- Protein identification
- PTM analysis
- Quantitative analysis
- Comparative studies
- Method development
- Reuse Scenarios
- Meta-studies
- Method comparison
- Algorithm development
- Quality benchmarking
- Training datasets