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An open-source repository for protein language models including ESM-2 and ESMFold.

An open-source, trainable PyTorch reproduction of AlphaFold 2 for protein-structure modeling.

A community-maintained RNA-seq pipeline built on Nextflow with extensive quality control and reproducibility support.

A cross-platform open-source toolkit for fast FASTA and FASTQ manipulation.

An open-source toolkit for genome arithmetic and interval-based genomics analysis.

A core open-source toolkit for manipulating SAM, BAM, and CRAM files in sequencing workflows.

A longstanding open-source Python toolkit for computational molecular biology and bioinformatics.

An open-source tool that aggregates outputs from many bioinformatics analyses into one quality-control report.

A workflow management system for reproducible and scalable data analysis, especially popular in academic bioinformatics.

A workflow system for building scalable, portable, and reproducible computational pipelines.

An open-source toolkit for probabilistic modeling of single-cell, multi-omics, and spatial data.

A widely used open-source Python toolkit for single-cell gene expression analysis.